The Biofilms Structural Database

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URIDINE-5'-DIPHOSPHATE

4DMW

Code

UDP

Name

URIDINE-5'-DIPHOSPHATE

Molecular Weight

404.16

Isomeric SMILES

O[C@@H]1[C@@H](CO[P@](O)(=O)OP(O)(O)=O)O[C@H]([C@@H]1O)n1ccc(=O)[nH]c1=O

Formula

C9H14N2O12P2

Identifiers

[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl phosphono hydrogen phosphate

Formal Charge

0

InChI

InChI=1S/C9H14N2O12P2/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(22-8)3-21-25(19,20)23-24(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1

Atom Count

39

InChIKey

XCCTYIAWTASOJW-XVFCMESISA-N

PDB codes

4DMW, 6OQ7, 7VFL

Type

RNA LINKING

Chiral Atom Count

4

Chiral Atoms

C1', C2', C3', C4'

Bond Count

40

Aromatic Bond Count

0

Leaving Atoms

O2B